Hitting build plate after upgrades

I added a glass bed, Sprite Extruder and CR touch to my Ender 3 Pro with the 4.2.2 board.

I updated firmware to Ender-3Pro_HW4.2.2_SW2.0.9.03_SpritExt_H300.

I removed the Z axis switch.

After finishing a print or stopping a print. If I Auto home. The nozzle often hits the bed and tries to keep going down.
Is the Gcode from cura for the print making this happen? Do I need to change a Z height setting in Cura?